Shigella boydii strain DMB SH134

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain DMB SH134 is a Gram-negative, rod-shaped bacterium that primarily resides in host-associated environments, particularly in Homo sapiens and Metazoa. This organism is classified as a facultative anaerobe, allowing it to thrive in both the presence and absence of oxygen. It is a chemoorganotroph, deriving energy from organic compounds. Shigella boydii DMB SH134 exhibits a cell arrangement that can be described as pairs and singles, and it possesses flagella, although it is not mobile. The bacterium has a mesophilic temperature range, with an optimal growth temperature of 37°C, which coincides with the average human body temperature, facilitating its role as a pathogen. This strain is known to be associated with shigellosis, a significant health concern, particularly in areas with inadequate sanitation. The bacterium has a biotic relationship characterized as free-living, indicating its ability to exist independently in its environment, although it primarily relies on hosts for survival and propagation. In summary, Shigella boydii strain DMB SH134 is a pathogenic organism that underscores the intricate relationship between human health and microbial ecology. Its adaptation to host-associated habitats and its pathogenic potential highlight the significance of monitoring such bacteria to mitigate the spread of shigellosis, particularly in vulnerable populations. The presence of only one replicon and two membranes further emphasizes its structural simplicity relative to other, more complex microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strainstrain DMB SH134

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain DMB SH134
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain DMB SH134

Gene Summary

Adenine Count

1179951 bp

Thymine Count

1180164 bp

Guanine Count

1201480 bp

Cytosine Count

1210614 bp

Genome Length

4772209 bp

Protein-coding Genes

4434 genes

Non-Coding Genes

251 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts ascorbate transporter subunit iiaUL57_05970Not AvailablePositive1169613 - 117007717285.6
3-keto-l-gulonate-6-phosphate decarboxylase uladUL57_05975Not AvailablePositive1170091 - 117074123650.4
l-ribulose-5-phosphate 3-epimerase ulaeUL57_05980Not AvailablePositive1170751 - 117160532078.5
l-ribulose-5-phosphate 4-epimeraseUL57_05985Not AvailablePositive1171605 - 117229125440.3
duf1471 domain-containing proteinUL57_05995Not AvailableNegative1173012 - 117328710165.9
30s ribosomal protein s6UL57_06000Not AvailablePositive1173614 - 117400915187.9
primosomal replication protein nUL57_06005Not AvailablePositive1174016 - 117433011470.9
30s ribosomal protein s18UL57_06010Not AvailablePositive1174335 - 11745628986.94
50s ribosomal protein l9UL57_06015Not AvailablePositive1174604 - 117505315770.0
duf2686 family proteinUL57_06020Not AvailableNegative1175124 - 117591829684.0

Displaying genes 1291 – 1300 of 4685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC5177732

Displaying health effects 1 – 1 of 1 in total