Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain TF10-3AC |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf71, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXD04_01665 | Not Available | Negative | 408115 - 408300 | 6834.97 |
| guanylate kinase | DXD04_01670 | Not Available | Negative | 408311 - 408877 | 21120.1 |
| yicc family protein | DXD04_01675 | Not Available | Negative | 408886 - 409761 | 33649.4 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DXD04_01680 | Not Available | Positive | 410208 - 410897 | 25116.4 |
| duf4290 domain-containing protein | DXD04_01685 | Not Available | Positive | 410961 - 411563 | 23950.8 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DXD04_01690 | Not Available | Positive | 411579 - 412886 | 47520.1 |
| 16s rrna processing protein rimm | DXD04_01695 | Not Available | Positive | 412889 - 413401 | 19592.4 |
| m23 family peptidase | DXD04_01700 | Not Available | Positive | 413416 - 414273 | 32085.6 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DXD04_01705 | Not Available | Positive | 414278 - 415435 | 42319.4 |
| rip metalloprotease rsep | DXD04_01710 | Not Available | Positive | 415475 - 416815 | 50908.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

