Phocaeicola plebeius strain TF10-3AC

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain TF10-3AC is a Gram-negative, non-motile, rod-shaped bacterium that thrives as a chemoheterotroph in the intestinal microflora of various animals, including Homo sapiens (humans), Gallus gallus (chickens), and Bos (cattle). This strain is strictly anaerobic, indicating that it requires an oxygen-free environment for growth. It has a single replicon and does not form spores, which is typical for many intestinal bacteria that are adapted to stable, nutrient-rich environments. The optimal growth temperature for P. plebeius strain TF10-3AC is 37°C, aligning with the average body temperature of its hosts, and it falls within the mesophilic temperature range, suggesting that it is well-suited for the warm conditions found in animal intestines. The presence of flagella indicates that it may possess the potential for movement in certain environments, although the strain is characterized as non-motile, likely due to its adaptation to a stable intestinal habitat. The ecological insight from studying P. plebeius strain TF10-3AC is its role in the complex microbiome of animal intestines, contributing to the digestion and fermentation processes. As a chemoheterotroph, it likely plays a significant part in breaking down organic matter and facilitating nutrient absorption, which is crucial for the health of its hosts. Understanding such microbial populations can provide valuable information about gut health and the maintenance of homeostasis in the intestinal ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
Strainstrain TF10-3AC

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain TF10-3AC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf71, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2807 domain-containing proteinDXD04_13065Not AvailableNegative3161701 - 316232722304.7
hlyd family efflux transporter periplasmic adaptor subunitDXD04_13070Not AvailableNegative3162341 - 316359147984.5
tolc family proteinDXD04_13075Not AvailableNegative3163617 - 316498752101.1
sigma-54-dependent fis family transcriptional regulatorDXD04_13080Not AvailablePositive3165200 - 316657351561.8
pas domain-containing sensor histidine kinaseDXD04_13085Not AvailablePositive3166563 - 316786748920.4
hypothetical proteinDXD04_13090Not AvailableNegative3167942 - 316838817049.7
naat family transporterDXD04_13095Not AvailableNegative3168556 - 316920023827.3
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseDXD04_13100Not AvailableNegative3169667 - 317150868465.1
5-(carboxyamino)imidazole ribonucleotide mutaseDXD04_13105Not AvailableNegative3171513 - 317202217675.0
glycine cleavage system protein gcvhDXD04_13110Not AvailableNegative3172041 - 317242114157.5

Displaying genes 2561 – 2570 of 3248 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.