Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain TF10-3AC |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf71, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DXD04_12040 | Not Available | Negative | 2884624 - 2887089 | 92435.0 |
| gscfa domain protein | DXD04_12045 | Not Available | Negative | 2887065 - 2888051 | 38321.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DXD04_12050 | Not Available | Positive | 2888135 - 2890042 | 70052.4 |
| trk system potassium transporter trka | DXD04_12055 | Not Available | Positive | 2890039 - 2891376 | 48814.1 |
| hypothetical protein | DXD04_12060 | Not Available | Positive | 2891479 - 2892822 | 49506.6 |
| duf3109 family protein | DXD04_12065 | Not Available | Negative | 2892911 - 2893492 | 22127.5 |
| ribonuclease hii | DXD04_12070 | Not Available | Positive | 2893624 - 2894226 | 22357.9 |
| hypothetical protein | DXD04_12075 | Not Available | Negative | 2894301 - 2894522 | 8351.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DXD04_12080 | Not Available | Negative | 2894525 - 2894953 | 16286.1 |
| metal abc transporter permease | DXD04_12085 | Not Available | Negative | 2894986 - 2895807 | 29797.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

