Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain TF10-3AC |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf71, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylosuccinate synthase | DXD04_06275 | Not Available | Positive | 1609374 - 1610642 | 46611.6 |
| tonb-dependent receptor | DXD04_06280 | Not Available | Positive | 1611083 - 1614178 | 113216.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXD04_06285 | Not Available | Positive | 1614203 - 1615717 | 57396.1 |
| s9 family peptidase | DXD04_06290 | Not Available | Positive | 1615750 - 1617714 | 73439.5 |
| crispr-associated endonuclease cas2 | DXD04_06295 | Not Available | Negative | 1619405 - 1619737 | 12857.6 |
| type ii crispr-associated endonuclease cas1 | DXD04_06300 | Not Available | Negative | 1619737 - 1620663 | 34879.4 |
| type ii crispr rna-guided endonuclease cas9 | DXD04_06305 | Not Available | Negative | 1620660 - 1625159 | 175450.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DXD04_06310 | Not Available | Negative | 1625436 - 1628663 | 119684.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DXD04_06315 | Not Available | Negative | 1628687 - 1629763 | 40086.6 |
| alpha-n-arabinofuranosidase | DXD04_06320 | Not Available | Negative | 1630111 - 1631187 | 40974.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

