Phocaeicola plebeius strain TF10-3AC

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain TF10-3AC is a Gram-negative, non-motile, rod-shaped bacterium that thrives as a chemoheterotroph in the intestinal microflora of various animals, including Homo sapiens (humans), Gallus gallus (chickens), and Bos (cattle). This strain is strictly anaerobic, indicating that it requires an oxygen-free environment for growth. It has a single replicon and does not form spores, which is typical for many intestinal bacteria that are adapted to stable, nutrient-rich environments. The optimal growth temperature for P. plebeius strain TF10-3AC is 37°C, aligning with the average body temperature of its hosts, and it falls within the mesophilic temperature range, suggesting that it is well-suited for the warm conditions found in animal intestines. The presence of flagella indicates that it may possess the potential for movement in certain environments, although the strain is characterized as non-motile, likely due to its adaptation to a stable intestinal habitat. The ecological insight from studying P. plebeius strain TF10-3AC is its role in the complex microbiome of animal intestines, contributing to the digestion and fermentation processes. As a chemoheterotroph, it likely plays a significant part in breaking down organic matter and facilitating nutrient absorption, which is crucial for the health of its hosts. Understanding such microbial populations can provide valuable information about gut health and the maintenance of homeostasis in the intestinal ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
Strainstrain TF10-3AC

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain TF10-3AC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf71, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
agmatine deiminase family proteinDXD04_05270Not AvailableNegative1363531 - 136456839430.6
translocation/assembly module tambDXD04_05275Not AvailableNegative1364581 - 1369146170881.0
sodium:proton antiporterDXD04_05280Not AvailablePositive1369404 - 137084951063.9
aminopeptidaseDXD04_05285Not AvailablePositive1370879 - 137227352574.0
susc/raga family tonb-linked outer membrane proteinDXD04_05290Not AvailablePositive1372412 - 1375162101582.0
ragb/susd family nutrient uptake outer membrane proteinDXD04_05295Not AvailablePositive1375173 - 137680462188.3
na(+)-translocating nadh-quinone reductase subunit aDXD04_05300Not AvailablePositive1376977 - 137832949467.0
nadh:ubiquinone reductase (na(+)-transporting) subunit bDXD04_05305Not AvailablePositive1378355 - 137953042607.4
na(+)-translocating nadh-quinone reductase subunit cDXD04_05310Not AvailablePositive1379545 - 138022524492.1
nadh:ubiquinone reductase (na(+)-transporting) subunit dDXD04_05315Not AvailablePositive1380240 - 138087822950.9

Displaying genes 1041 – 1050 of 3248 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.