Odoribacter splanchnicus strain AF16-14

Non-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Odoribacteraceae

Genus

Odoribacter

Description

Odoribacter splanchnicus strain AF16-14 is a Gram-negative, anaerobic, chemoorganotrophic bacterium primarily associated with the healthy microbiota of Homo sapiens. This strain exhibits a mesophilic temperature range, indicating its optimal growth conditions are typically found within moderate temperature environments. With only one replicon, O. splanchnicus strain AF16-14 is classified as free-living, meaning it does not rely on a host for its survival, although it is found in the human gut microbiome. This bacterium does not possess motility, which suggests it relies on passive movement within its habitat rather than active locomotion. The presence of O. splanchnicus in the healthy human microbiota highlights its potential role in maintaining gut health and contributing to the overall balance of microbial communities. The anaerobic nature of this organism points to its adaptation to environments devoid of oxygen, such as the human gastrointestinal tract. In summary, Odoribacter splanchnicus strain AF16-14 represents a significant member of the gut microbiota, functioning as a chemoorganotroph in a free-living capacity, and contributing to the complex interactions within the microbial ecosystem of humans. Its study may provide insights into the microbial dynamics that influence health and disease in the human host.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyOdoribacteraceae
GenusOdoribacter
SpeciesOdoribacter splanchnicus
Strainstrain AF16-14

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitathealthy microbiota
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Odoribacter splanchnicus strain AF16-14 AF16-14.Scaf85, whole

Gene Summary

Adenine Count

1293129 bp

Thymine Count

1299686 bp

Guanine Count

1021539 bp

Cytosine Count

1004230 bp

Genome Length

4619031 bp

Protein-coding Genes

3779 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tigr00374 family proteinDWW57_06710Not AvailableNegative1662003 - 166302238930.0
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaDWW57_06715Not AvailablePositive1663113 - 166389830111.5
magnesium transporterDWW57_06720Not AvailablePositive1663922 - 166528950264.9
arginine deiminaseDWW57_06725Not AvailablePositive1665511 - 166679448196.2
1,4-dihydroxy-2-naphthoate octaprenyltransferaseDWW57_06730Not AvailablePositive1667147 - 166804932886.1
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieDWW57_06735Not AvailableNegative1668062 - 166875425891.7
duf3276 family proteinDWW57_06740Not AvailableNegative1668842 - 166914411644.5
hypothetical proteinDWW57_06745Not AvailablePositive1669357 - 16695697892.87
hypothetical proteinDWW57_06750Not AvailableNegative1669573 - 167029526893.4
s-ribosylhomocysteine lyaseDWW57_06755Not AvailableNegative1670543 - 167102218525.5

Displaying genes 1321 – 1330 of 3842 in total

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 1–10 of 83 metabolites

Health Effects

No health effects information available for this bacterium.