Odoribacter laneus YIT 12061

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Odoribacteraceae

Genus

Odoribacter

Description

Odoribacter laneus YIT 12061 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbe is part of the diverse community of gut microbiota, contributing to the complex interactions within its ecological niche. While specific metabolic traits and growth conditions of O. laneus YIT 12061 remain to be fully elucidated, its classification as a member of the Odoribacter genus suggests potential roles in the fermentation of dietary fibers and the production of short-chain fatty acids, which are important for intestinal health. The Gram-negative nature of O. laneus YIT 12061 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interactions with other gut microbes and the host. This structural feature also suggests inherent resistance to certain antibiotics, which is a common trait among Gram-negative bacteria. Further research into O. laneus YIT 12061 may provide valuable insights into its specific functional roles in the gut microbiome, including its contributions to metabolic processes and its potential influences on host physiology. Understanding the ecological significance of this bacterium could enhance our knowledge of microbial diversity and its implications for gut health, ultimately aiding in the development of therapeutic strategies to maintain or restore a balanced microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyOdoribacteraceae
GenusOdoribacter
SpeciesOdoribacter laneus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Odoribacter laneus YIT 12061

Accession NumberADMC00000000.1

Gene Summary

Adenine Count

1131366 bp

Thymine Count

1100213 bp

Guanine Count

718607 bp

Cytosine Count

803275 bp

Genome Length

3753461 bp

Protein-coding Genes

3096 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+581248 - 581259Not Available
IntegraseHMPREF9449_00492Not Available+584569 - 58579548174.2
hypothetical proteinHMPREF9449_00493Not Available-585861 - 58616312008.2
hypothetical proteinHMPREF9449_00494Not Available-586170 - 58646611081.6
hypothetical proteinHMPREF9449_00495Not Available-586713 - 58700611474.9
hypothetical proteinHMPREF9449_00496Not Available-587088 - 58738111258.4
hypothetical proteinHMPREF9449_00497Not Available-587368 - 58768212265.5
hypothetical proteinHMPREF9449_00498Not Available+587908 - 58852223405.4
hypothetical proteinHMPREF9449_00499Not Available+588512 - 58946836264.8
hypothetical proteinHMPREF9449_00500Not Available+589535 - 59025726537.5

Displaying genes 1 – 10 of 3169 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

456 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 456 metabolites