Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-xylosidase | DW035_05025 | Not Available | Negative | 1209493 - 1211988 | 95374.8 |
| cytochrome d ubiquinol oxidase subunit ii | DW035_05030 | Not Available | Negative | 1212317 - 1213468 | 43415.3 |
| cytochrome ubiquinol oxidase subunit i | DW035_05035 | Not Available | Negative | 1213502 - 1214998 | 55638.5 |
| duf4492 domain-containing protein | DW035_05040 | Not Available | Negative | 1215040 - 1215258 | 8827.07 |
| tolc family protein | DW035_05045 | Not Available | Positive | 1215401 - 1216744 | 50402.5 |
| efflux rnd transporter periplasmic adaptor subunit | DW035_05050 | Not Available | Positive | 1216757 - 1217980 | 44130.9 |
| abc transporter atp-binding protein | DW035_05055 | Not Available | Positive | 1217993 - 1218739 | 27343.8 |
| abc transporter permease | DW035_05060 | Not Available | Positive | 1218763 - 1219983 | 44269.2 |
| sensor histidine kinase | DW035_05065 | Not Available | Positive | 1220125 - 1221201 | 41737.7 |
| dna-binding response regulator | DW035_05070 | Not Available | Positive | 1221198 - 1221929 | 27956.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

