Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spor domain-containing protein | DW035_04975 | Not Available | Negative | 1196340 - 1196834 | 17676.0 |
| ytxh domain-containing protein | DW035_04980 | Not Available | Positive | 1197029 - 1197232 | 7166.8 |
| phage holin family protein | DW035_04985 | Not Available | Positive | 1197309 - 1197677 | 14005.9 |
| hypothetical protein | DW035_04990 | Not Available | Positive | 1197682 - 1197951 | 10532.9 |
| peptidase s41 | DW035_04995 | Not Available | Positive | 1197951 - 1201202 | 122808.0 |
| glucuronyl hydrolase | DW035_05000 | Not Available | Negative | 1201300 - 1202520 | 45980.4 |
| glycoside hydrolase | DW035_05005 | Not Available | Negative | 1202533 - 1204185 | 62500.3 |
| alpha-glucosidase | DW035_05010 | Not Available | Negative | 1204333 - 1206270 | 73615.8 |
| beta-glycosidase | DW035_05015 | Not Available | Negative | 1206350 - 1207834 | 56770.4 |
| endo-polygalacturonase | DW035_05020 | Not Available | Negative | 1207858 - 1209303 | 54342.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

