Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | DW035_04925 | Not Available | Negative | 1183780 - 1185141 | 52026.2 |
| glycosyltransferase family 1 protein | DW035_04930 | Not Available | Negative | 1185156 - 1186427 | 48468.6 |
| 4-alpha-glucanotransferase | DW035_04935 | Not Available | Negative | 1186443 - 1188380 | 74420.7 |
| serine--trna ligase | DW035_04940 | Not Available | Negative | 1188658 - 1189932 | 47777.3 |
| hypothetical protein | DW035_04945 | Not Available | Negative | 1190035 - 1191252 | 46518.1 |
| 3-deoxy-8-phosphooctulonate synthase | DW035_04950 | Not Available | Negative | 1191256 - 1192059 | 29336.8 |
| lipid kinase | DW035_04955 | Not Available | Negative | 1192061 - 1192993 | 35257.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DW035_04960 | Not Available | Negative | 1193000 - 1193911 | 35073.4 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DW035_04965 | Not Available | Negative | 1194035 - 1195045 | 35945.2 |
| glycoside hydrolase xylanase | DW035_04970 | Not Available | Negative | 1195278 - 1196231 | 35012.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

