Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_04875 | Not Available | Negative | 1171612 - 1172655 | 38447.5 |
| alpha-n-arabinofuranosidase | DW035_04880 | Not Available | Negative | 1172852 - 1174390 | 58131.5 |
| endolytic transglycosylase mltg | DW035_04885 | Not Available | Positive | 1174600 - 1175625 | 38665.6 |
| trka family potassium uptake protein | DW035_04890 | Not Available | Negative | 1175634 - 1176323 | 25207.6 |
| potassium transporter | DW035_04895 | Not Available | Negative | 1176327 - 1178156 | 67455.2 |
| trpb-like pyridoxal phosphate-dependent enzyme | DW035_04900 | Not Available | Positive | 1178341 - 1179705 | 50186.0 |
| aspartate 1-decarboxylase | DW035_04905 | Not Available | Negative | 1179936 - 1180286 | 12766.6 |
| pantoate--beta-alanine ligase | DW035_04910 | Not Available | Negative | 1180293 - 1181138 | 31668.1 |
| glycogen synthase | DW035_04915 | Not Available | Positive | 1181396 - 1182211 | 31182.0 |
| duf4270 domain-containing protein | DW035_04920 | Not Available | Positive | 1182240 - 1183712 | 55153.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

