Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthan lyase | DW035_04720 | Not Available | Negative | 1132917 - 1135796 | 107637.0 |
| ketol-acid reductoisomerase | DW035_04725 | Not Available | Negative | 1135917 - 1136960 | 38119.4 |
| acyl-[acyl-carrier-protein] thioesterase | DW035_04730 | Not Available | Negative | 1137015 - 1137761 | 28666.2 |
| acetolactate synthase small subunit | DW035_04735 | Not Available | Negative | 1137765 - 1138322 | 21282.5 |
| biosynthetic-type acetolactate synthase large subunit | DW035_04740 | Not Available | Negative | 1138342 - 1140039 | 61581.4 |
| dihydroxy-acid dehydratase | DW035_04745 | Not Available | Negative | 1140050 - 1141852 | 63999.1 |
| glycosyl hydrolase | DW035_04750 | Not Available | Positive | 1142431 - 1144140 | 63500.2 |
| phospho-sugar mutase | DW035_04760 | Not Available | Negative | 1144793 - 1146538 | 64406.4 |
| m23 family peptidase | DW035_04765 | Not Available | Positive | 1146708 - 1148369 | 62490.2 |
| dipeptidase | DW035_04770 | Not Available | Positive | 1148412 - 1150061 | 62156.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

