Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW035_04670 | Not Available | Negative | 1116985 - 1117139 | 6020.52 |
| is21 family transposase | DW035_04675 | Not Available | Positive | 1118061 - 1119668 | 62071.3 |
| hypothetical protein | DW035_04680 | Not Available | Positive | 1119669 - 1120397 | 27545.4 |
| hypothetical protein | DW035_04685 | Not Available | Negative | 1120441 - 1120659 | 8192.85 |
| duf4976 domain-containing protein | DW035_04690 | Not Available | Negative | 1120783 - 1122363 | 61635.0 |
| beta-n-acetylhexosaminidase | DW035_04695 | Not Available | Negative | 1122414 - 1124045 | 62104.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_04700 | Not Available | Negative | 1124144 - 1125958 | 68455.1 |
| tonb-dependent receptor | DW035_04705 | Not Available | Negative | 1125971 - 1129219 | 119806.0 |
| beta-n-acetylglucosaminidase | DW035_04710 | Not Available | Positive | 1129626 - 1132187 | 96798.2 |
| diguanylate cyclase | DW035_04715 | Not Available | Negative | 1132340 - 1132864 | 19380.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

