Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | DW035_04570 | Not Available | Negative | 1093034 - 1094521 | 57193.2 |
| abc transporter atp-binding protein | DW035_04575 | Not Available | Negative | 1094591 - 1095256 | 24592.1 |
| abc transporter permease | DW035_04580 | Not Available | Negative | 1095321 - 1096616 | 49286.9 |
| abc transporter permease | DW035_04585 | Not Available | Negative | 1096638 - 1097951 | 49679.4 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW035_04590 | Not Available | Negative | 1098025 - 1099275 | 47158.7 |
| putative dna modification/repair radical sam protein | DW035_04595 | Not Available | Positive | 1099490 - 1100779 | 49226.3 |
| linear amide c-n hydrolase | DW035_04600 | Not Available | Negative | 1100815 - 1101882 | 39257.8 |
| dna metabolism protein | DW035_04605 | Not Available | Positive | 1102016 - 1102783 | 30639.8 |
| trna pseudouridine(38-40) synthase trua | DW035_04610 | Not Available | Negative | 1102780 - 1103538 | 29198.7 |
| hypothetical protein | DW035_04615 | Not Available | Negative | 1103550 - 1104218 | 25080.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

