Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-thr | Not Available | Not Available | Positive | 1084343 - 1084419 | Not Available |
| duf4199 domain-containing protein | DW035_04525 | Not Available | Positive | 1084720 - 1085250 | 20517.5 |
| glycosyltransferase | DW035_04530 | Not Available | Positive | 1085270 - 1086223 | 36494.1 |
| hypothetical protein | DW035_04535 | Not Available | Positive | 1086223 - 1086723 | 18913.6 |
| hypothetical protein | DW035_04540 | Not Available | Positive | 1086671 - 1087417 | 27730.4 |
| manganese efflux pump | DW035_04545 | Not Available | Positive | 1087423 - 1087995 | 21032.4 |
| fad:protein fmn transferase | DW035_04550 | Not Available | Positive | 1088000 - 1089013 | 37863.3 |
| eama family transporter | DW035_04555 | Not Available | Negative | 1089268 - 1090173 | 34189.1 |
| pas domain-containing protein | DW035_04560 | Not Available | Negative | 1090276 - 1091622 | 50937.3 |
| sigma-54-dependent fis family transcriptional regulator | DW035_04565 | Not Available | Negative | 1091635 - 1092993 | 50396.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

