Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4847 domain-containing protein | DW035_04415 | Not Available | Positive | 1068026 - 1068499 | 18152.7 |
| cmp deaminase | DW035_04420 | Not Available | Positive | 1068510 - 1068944 | 16230.6 |
| s41 family peptidase | DW035_04425 | Not Available | Positive | 1068950 - 1070602 | 61222.5 |
| 5-formyltetrahydrofolate cyclo-ligase | DW035_04430 | Not Available | Positive | 1070609 - 1071172 | 21583.8 |
| duf721 domain-containing protein | DW035_04435 | Not Available | Negative | 1071147 - 1071437 | 11168.7 |
| dna replication and repair protein recf | DW035_04440 | Not Available | Negative | 1071424 - 1072545 | 43452.2 |
| tetratricopeptide repeat protein | DW035_04445 | Not Available | Positive | 1072694 - 1073371 | 24216.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | DW035_04450 | Not Available | Positive | 1073477 - 1073971 | 17653.0 |
| Trna-tyr | Not Available | Not Available | Positive | 1074022 - 1074107 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1074114 - 1074186 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

