Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosomal replication initiator protein dnaa | DW035_04365 | Not Available | Positive | 1055843 - 1057258 | 53742.6 |
| nadph-dependent oxidoreductase | DW035_04370 | Not Available | Negative | 1057316 - 1058056 | 27975.5 |
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | DW035_04375 | Not Available | Positive | 1058380 - 1060923 | 96440.6 |
| dihydroneopterin aldolase | DW035_04380 | Not Available | Positive | 1061027 - 1061398 | 14164.1 |
| had family hydrolase | DW035_04385 | Not Available | Positive | 1061405 - 1062061 | 24566.2 |
| sel1 repeat family protein | DW035_04390 | Not Available | Negative | 1062217 - 1063317 | 41882.6 |
| trna 2-thiouridine(34) synthase mnma | DW035_04395 | Not Available | Negative | 1063335 - 1064405 | 39734.3 |
| marc family protein | DW035_04400 | Not Available | Negative | 1064475 - 1065074 | 21943.0 |
| crp/fnr family transcriptional regulator | DW035_04405 | Not Available | Positive | 1065258 - 1065944 | 26813.7 |
| m3 family peptidase | DW035_04410 | Not Available | Positive | 1065978 - 1068017 | 78471.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

