Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DW035_04315 | Not Available | Positive | 1040734 - 1041579 | 32181.2 |
| helix-turn-helix domain-containing protein | DW035_04320 | Not Available | Positive | 1041674 - 1044574 | 110713.0 |
| duf5110 domain-containing protein | DW035_04325 | Not Available | Positive | 1044703 - 1047177 | 94949.8 |
| phosphoenolpyruvate synthase | DW035_04330 | Not Available | Negative | 1047249 - 1050215 | 113516.0 |
| nadp-specific glutamate dehydrogenase | DW035_04335 | Not Available | Positive | 1050422 - 1051759 | 48779.8 |
| Trna-his | Not Available | Not Available | Positive | 1051992 - 1052065 | Not Available |
| Trna-his | Not Available | Not Available | Positive | 1052101 - 1052174 | Not Available |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DW035_04350 | Not Available | Negative | 1052262 - 1053140 | 31428.5 |
| n-acetylmuramoyl-l-alanine amidase | DW035_04355 | Not Available | Positive | 1053309 - 1054502 | 44119.0 |
| mce family protein | DW035_04360 | Not Available | Positive | 1054524 - 1055411 | 32335.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

