Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family transcriptional regulator | DW035_04165 | Not Available | Negative | 999178 - 1000383 | 44309.8 |
| glucosamine-6-phosphate deaminase | DW035_04170 | Not Available | Positive | 1000566 - 1001357 | 29012.7 |
| glucosamine-6-phosphate deaminase | DW035_04175 | Not Available | Positive | 1001369 - 1003354 | 74802.1 |
| transglutaminase domain-containing protein | DW035_04180 | Not Available | Positive | 1003471 - 1006107 | 98015.6 |
| copper homeostasis protein cutc | DW035_04185 | Not Available | Negative | 1006091 - 1006840 | 27054.8 |
| Trna-arg | Not Available | Not Available | Positive | 1007101 - 1007172 | Not Available |
| mboat family protein | DW035_04195 | Not Available | Negative | 1007336 - 1008838 | 58545.2 |
| hypothetical protein | DW035_04200 | Not Available | Negative | 1008804 - 1009772 | 36342.4 |
| hypothetical protein | DW035_04205 | Not Available | Negative | 1009759 - 1011135 | 51462.9 |
| tetr/acrr family transcriptional regulator | DW035_04210 | Not Available | Negative | 1011264 - 1011908 | 25348.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

