Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid-binding protein | DW035_04115 | Not Available | Negative | 987645 - 988061 | 15292.7 |
| phenylacetate--coa ligase family protein | DW035_04120 | Not Available | Negative | 988079 - 989380 | 48911.1 |
| pyridoxal phosphate-dependent aminotransferase | DW035_04125 | Not Available | Negative | 989423 - 990739 | 48640.6 |
| indolepyruvate oxidoreductase subunit beta | DW035_04130 | Not Available | Negative | 990746 - 991333 | 21277.9 |
| indolepyruvate ferredoxin oxidoreductase | DW035_04135 | Not Available | Negative | 991330 - 992943 | 58134.8 |
| amidohydrolase | DW035_04140 | Not Available | Negative | 992956 - 993720 | 28633.7 |
| lysine--trna ligase | DW035_04145 | Not Available | Positive | 994084 - 995811 | 66226.1 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DW035_04150 | Not Available | Positive | 995884 - 996879 | 37217.3 |
| glucose-6-phosphate isomerase | DW035_04155 | Not Available | Positive | 996895 - 998244 | 49966.9 |
| had family hydrolase | DW035_04160 | Not Available | Positive | 998369 - 999109 | 27501.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

