Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (fe-s)-binding protein | DW035_04065 | Not Available | Negative | 974151 - 974891 | 27308.0 |
| dna-binding response regulator | DW035_04070 | Not Available | Negative | 975183 - 975791 | 22735.6 |
| hemerythrin domain-containing protein | DW035_04075 | Not Available | Negative | 975788 - 976468 | 26227.5 |
| hypothetical protein | DW035_04080 | Not Available | Positive | 976720 - 977058 | 13203.7 |
| ygiq family radical sam protein | DW035_04085 | Not Available | Positive | 977068 - 978921 | 70691.2 |
| dmt family transporter | DW035_04090 | Not Available | Negative | 978947 - 979864 | 33374.1 |
| citrate/2-methylcitrate synthase | DW035_04095 | Not Available | Negative | 979995 - 981335 | 50760.3 |
| nadp-dependent isocitrate dehydrogenase | DW035_04100 | Not Available | Negative | 981389 - 982651 | 46217.9 |
| aconitate hydratase | DW035_04105 | Not Available | Negative | 982657 - 984912 | 82064.1 |
| sodium-translocating pyrophosphatase | DW035_04110 | Not Available | Positive | 985384 - 987588 | 77065.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

