Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotransferase | DW035_03965 | Not Available | Positive | 950326 - 951756 | 54992.6 |
| nucleotidyltransferase family protein | DW035_03970 | Not Available | Positive | 951753 - 952490 | 28009.9 |
| lps-assembly protein lptd | DW035_03975 | Not Available | Negative | 952487 - 955228 | 104478.0 |
| hdig domain-containing protein | DW035_03980 | Not Available | Negative | 955318 - 955854 | 20407.8 |
| duf1343 domain-containing protein | DW035_03985 | Not Available | Positive | 955924 - 957093 | 43990.6 |
| signal recognition particle protein | DW035_03990 | Not Available | Negative | 957166 - 958491 | 49069.0 |
| mate family efflux transporter | DW035_03995 | Not Available | Negative | 958558 - 959880 | 48427.8 |
| hypothetical protein | DW035_04000 | Not Available | Positive | 960094 - 961422 | 48798.3 |
| pdz domain-containing protein | DW035_04005 | Not Available | Positive | 961580 - 963082 | 55860.0 |
| n-glycanase | DW035_04010 | Not Available | Negative | 963167 - 964405 | 46396.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

