Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_03915 | Not Available | Negative | 938667 - 939437 | 29167.8 |
| port family protein | DW035_03920 | Not Available | Negative | 939491 - 940123 | 23908.8 |
| duf4249 domain-containing protein | DW035_03925 | Not Available | Negative | 940158 - 941123 | 36925.5 |
| tonb-dependent receptor | DW035_03930 | Not Available | Negative | 941130 - 943703 | 98123.0 |
| duf4974 domain-containing protein | DW035_03935 | Not Available | Negative | 943703 - 944518 | 30632.0 |
| rna polymerase sigma-70 factor | DW035_03940 | Not Available | Negative | 944583 - 945095 | 19993.1 |
| gntr family transcriptional regulator | DW035_03945 | Not Available | Negative | 945323 - 945697 | 14713.8 |
| hypothetical protein | DW035_03950 | Not Available | Negative | 945702 - 946421 | 27380.0 |
| abc transporter atp-binding protein | DW035_03955 | Not Available | Negative | 946418 - 947230 | 30668.3 |
| excinuclease abc subunit uvra | DW035_03960 | Not Available | Positive | 947537 - 950308 | 103706.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

