Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dutp diphosphatase | DW035_03715 | Not Available | Negative | 899664 - 900098 | 15768.0 |
| deoxyguanosinetriphosphate triphosphohydrolase | DW035_03720 | Not Available | Positive | 900237 - 901568 | 50499.4 |
| gnat family n-acetyltransferase | DW035_03725 | Not Available | Negative | 901578 - 902567 | 37818.5 |
| glycerol acyltransferase | DW035_03730 | Not Available | Negative | 902596 - 903414 | 31023.9 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | DW035_03735 | Not Available | Positive | 903681 - 904595 | 35028.0 |
| hypothetical protein | DW035_03740 | Not Available | Positive | 904599 - 904946 | 13374.2 |
| pasta domain-containing protein | DW035_03745 | Not Available | Positive | 904948 - 907071 | 78164.2 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DW035_03750 | Not Available | Positive | 907078 - 908535 | 53476.5 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | DW035_03755 | Not Available | Positive | 908553 - 909821 | 47202.8 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | DW035_03760 | Not Available | Positive | 909826 - 911157 | 49562.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

