Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain fatty acid--coa ligase | DW035_03660 | Not Available | Negative | 879422 - 881236 | 69032.8 |
| m20/m25/m40 family metallo-hydrolase | DW035_03665 | Not Available | Positive | 881361 - 882425 | 38880.6 |
| duf5110 domain-containing protein | DW035_03670 | Not Available | Negative | 882532 - 886347 | 142297.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_03680 | Not Available | Negative | 887735 - 889807 | 78646.2 |
| tonb-dependent receptor | DW035_03685 | Not Available | Negative | 889832 - 893023 | 118321.0 |
| fecr family protein | DW035_03690 | Not Available | Negative | 893513 - 894598 | 41399.6 |
| sigma-70 family rna polymerase sigma factor | DW035_03695 | Not Available | Negative | 894771 - 895361 | 22770.5 |
| peptidase m23 | DW035_03700 | Not Available | Negative | 895732 - 897042 | 50334.6 |
| duf4292 domain-containing protein | DW035_03705 | Not Available | Negative | 897039 - 897782 | 28022.0 |
| hypothetical protein | DW035_03710 | Not Available | Negative | 897869 - 899653 | 69068.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

