Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| purine permease | DW035_03610 | Not Available | Negative | 869345 - 870679 | 46609.1 |
| xanthine phosphoribosyltransferase | DW035_03615 | Not Available | Negative | 870688 - 871257 | 20999.9 |
| fimbrillin family protein | DW035_03620 | Not Available | Negative | 871422 - 872384 | 35494.2 |
| alkaline phosphatase | DW035_03625 | Not Available | Positive | 872539 - 873957 | 52188.7 |
| helix-hairpin-helix domain-containing protein | DW035_03630 | Not Available | Negative | 873959 - 874855 | 34896.4 |
| sodium-dependent transporter | DW035_03635 | Not Available | Negative | 874855 - 876228 | 49419.5 |
| hypothetical protein | DW035_03640 | Not Available | Positive | 876319 - 876714 | 15214.9 |
| rna polymerase sigma factor | DW035_03645 | Not Available | Negative | 876821 - 877324 | 19854.7 |
| cyth domain-containing protein | DW035_03650 | Not Available | Negative | 877462 - 877968 | 19706.4 |
| pcrf domain-containing protein | DW035_03655 | Not Available | Negative | 878211 - 879326 | 42555.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

