Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DW035_03560 | Not Available | Negative | 855744 - 856061 | 11552.9 |
| dna polymerase iii subunit alpha | DW035_03565 | Not Available | Negative | 856100 - 859897 | 144044.0 |
| hypothetical protein | DW035_03570 | Not Available | Negative | 860028 - 860597 | 22527.2 |
| twin-arginine translocase tata/tate family subunit | DW035_03575 | Not Available | Positive | 861044 - 861268 | 8349.34 |
| twin-arginine translocase subunit tatc | DW035_03580 | Not Available | Positive | 861274 - 862089 | 31293.1 |
| glycoside hydrolase family 92 protein | DW035_03585 | Not Available | Negative | 862100 - 864328 | 85249.9 |
| glycosidase | DW035_03590 | Not Available | Negative | 864398 - 865369 | 37021.0 |
| mfs transporter | DW035_03595 | Not Available | Negative | 865392 - 866759 | 51076.5 |
| mfs transporter | DW035_03600 | Not Available | Negative | 866980 - 868557 | 57986.1 |
| duf3332 domain-containing protein | DW035_03605 | Not Available | Positive | 868720 - 869271 | 20061.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

