Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein radc | DW035_03510 | Not Available | Negative | 846757 - 847446 | 25700.9 |
| glycosyltransferase | DW035_03515 | Not Available | Negative | 847506 - 848501 | 37331.2 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DW035_03520 | Not Available | Negative | 848515 - 848994 | 17541.3 |
| faa hydrolase family protein | DW035_03525 | Not Available | Negative | 848991 - 849608 | 23279.1 |
| redox-sensing transcriptional repressor rex | DW035_03530 | Not Available | Negative | 849613 - 850266 | 24248.6 |
| translation initiation factor | DW035_03535 | Not Available | Positive | 850377 - 850715 | 12593.1 |
| dna-binding response regulator | DW035_03540 | Not Available | Negative | 850890 - 851663 | 29367.1 |
| hypothetical protein | DW035_03545 | Not Available | Positive | 851883 - 853907 | 78739.4 |
| hypothetical protein | DW035_03550 | Not Available | Positive | 854043 - 855326 | 48845.9 |
| hypothetical protein | DW035_03555 | Not Available | Negative | 855389 - 855724 | 12794.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

