Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_03360 | Not Available | Positive | 821927 - 823519 | 62061.8 |
| dna-binding protein | DW035_03365 | Not Available | Positive | 823740 - 824381 | 24268.1 |
| peptidylprolyl isomerase | DW035_03370 | Not Available | Positive | 824449 - 825288 | 30933.1 |
| insulinase family protein | DW035_03375 | Not Available | Positive | 825301 - 826539 | 47288.8 |
| mate family efflux transporter | DW035_03380 | Not Available | Positive | 826536 - 827861 | 48745.7 |
| response regulator | DW035_03385 | Not Available | Positive | 827865 - 830393 | 95359.0 |
| sigma-54-dependent fis family transcriptional regulator | DW035_03390 | Not Available | Positive | 830434 - 831786 | 50728.6 |
| rna pseudouridine synthase | DW035_03395 | Not Available | Negative | 832076 - 832747 | 25443.8 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DW035_03400 | Not Available | Negative | 832831 - 833577 | 26089.5 |
| tetr/acrr family transcriptional regulator | DW035_03405 | Not Available | Negative | 833594 - 834202 | 23426.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

