Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp endopeptidase proteolytic subunit clpp | DW035_03310 | Not Available | Negative | 806639 - 807310 | 24841.7 |
| trigger factor | DW035_03315 | Not Available | Negative | 807469 - 808815 | 51357.0 |
| abc transporter atp-binding protein | DW035_03320 | Not Available | Negative | 809022 - 809795 | 29088.2 |
| abc transporter permease | DW035_03325 | Not Available | Negative | 809792 - 810535 | 27384.5 |
| lps export abc transporter atp-binding protein | DW035_03330 | Not Available | Positive | 810675 - 811493 | 30881.2 |
| susf/suse family outer membrane protein | DW035_03335 | Not Available | Negative | 811558 - 812721 | 42673.8 |
| starch-binding outer membrane lipoprotein susd | DW035_03340 | Not Available | Negative | 812742 - 814409 | 63136.7 |
| tonb-dependent receptor | DW035_03345 | Not Available | Negative | 814432 - 817443 | 111102.0 |
| glycoside hydrolase family 97 protein | DW035_03350 | Not Available | Negative | 817536 - 819716 | 83277.0 |
| alpha-amylase | DW035_03355 | Not Available | Negative | 819895 - 821748 | 70985.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

