Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW035_03260 | Not Available | Positive | 789249 - 792293 | 112501.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_03265 | Not Available | Positive | 792307 - 794094 | 67827.1 |
| dna mismatch repair endonuclease mutl | DW035_03270 | Not Available | Negative | 794474 - 796531 | 75728.5 |
| hypothetical protein | DW035_03275 | Not Available | Negative | 796528 - 796824 | 11599.4 |
| hypothetical protein | DW035_03280 | Not Available | Negative | 796828 - 798525 | 64728.6 |
| peptidylprolyl isomerase | DW035_03285 | Not Available | Negative | 798525 - 799883 | 51820.9 |
| hypothetical protein | DW035_03290 | Not Available | Negative | 799960 - 801267 | 50670.8 |
| imp dehydrogenase | DW035_03295 | Not Available | Negative | 801392 - 802867 | 52647.8 |
| dna helicase recq | DW035_03300 | Not Available | Negative | 803031 - 805214 | 82051.4 |
| atp-dependent clp protease atp-binding subunit clpx | DW035_03305 | Not Available | Negative | 805357 - 806607 | 46650.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

