Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DW035_03160 | Not Available | Negative | 756044 - 759097 | 113202.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_03165 | Not Available | Negative | 759552 - 760988 | 53377.2 |
| tonb-dependent receptor | DW035_03170 | Not Available | Negative | 761000 - 763930 | 109151.0 |
| site-specific integrase | DW035_03175 | Not Available | Negative | 764353 - 765516 | 45990.9 |
| tonb-dependent receptor | DW035_03180 | Not Available | Positive | 765858 - 768824 | 108394.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_03185 | Not Available | Positive | 768843 - 770303 | 55623.7 |
| nucleotidyltransferase | DW035_03190 | Not Available | Negative | 770521 - 771426 | 33633.1 |
| hypothetical protein | DW035_03195 | Not Available | Positive | 771543 - 776177 | 171880.0 |
| hypothetical protein | DW035_03200 | Not Available | Positive | 776149 - 778482 | 88896.9 |
| hypothetical protein | DW035_03205 | Not Available | Positive | 778626 - 778988 | 13819.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

