Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m13 family peptidase | DW035_03110 | Not Available | Negative | 737600 - 739639 | 76110.0 |
| abc transporter atp-binding protein | DW035_03115 | Not Available | Negative | 739671 - 741605 | 73769.7 |
| transporter | DW035_03120 | Not Available | Negative | 741681 - 742652 | 35675.8 |
| fumarate hydratase | DW035_03125 | Not Available | Negative | 742805 - 744448 | 60539.5 |
| tlpa family protein disulfide reductase | DW035_03130 | Not Available | Negative | 744548 - 746050 | 55906.1 |
| duf4954 family protein | DW035_03135 | Not Available | Negative | 746113 - 748104 | 74527.5 |
| gtpase hflx | DW035_03140 | Not Available | Negative | 748115 - 749371 | 47630.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_03145 | Not Available | Negative | 749455 - 750843 | 52221.9 |
| tonb-dependent receptor | DW035_03150 | Not Available | Negative | 750870 - 754025 | 114022.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_03155 | Not Available | Negative | 754379 - 756031 | 61662.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

