Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW035_03010 | Not Available | Negative | 714145 - 715401 | 47315.5 |
| abc transporter permease | DW035_03015 | Not Available | Negative | 715414 - 716589 | 43991.6 |
| biotin/lipoyl-binding protein | DW035_03020 | Not Available | Negative | 716596 - 717579 | 35874.2 |
| tolc family protein | DW035_03025 | Not Available | Negative | 717589 - 719082 | 54546.1 |
| peptidase s41 | DW035_03030 | Not Available | Negative | 719220 - 720590 | 50997.3 |
| hypothetical protein | DW035_03035 | Not Available | Negative | 720647 - 721516 | 33264.1 |
| hypothetical protein | DW035_03040 | Not Available | Negative | 721586 - 723325 | 64255.2 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DW035_03045 | Not Available | Positive | 723459 - 724217 | 29541.1 |
| mrp family atp-binding protein | DW035_03050 | Not Available | Positive | 724237 - 725334 | 39414.8 |
| dna polymerase iv | DW035_03055 | Not Available | Negative | 725778 - 726884 | 41890.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

