Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose mutarotase | DW035_02910 | Not Available | Positive | 689112 - 689426 | 12356.7 |
| hybrid sensor histidine kinase/response regulator | DW035_02915 | Not Available | Positive | 689525 - 693835 | 163193.0 |
| asnc family transcriptional regulator | DW035_02920 | Not Available | Positive | 694026 - 694505 | 18127.0 |
| dihydrofolate reductase | DW035_02925 | Not Available | Negative | 694517 - 695011 | 18873.4 |
| thymidylate synthase | DW035_02930 | Not Available | Negative | 695030 - 695824 | 30609.6 |
| rrna cytosine-c5-methyltransferase | DW035_02935 | Not Available | Positive | 695899 - 697311 | 52488.8 |
| tolc family protein | DW035_02940 | Not Available | Negative | 697502 - 698836 | 50151.3 |
| efflux rnd transporter periplasmic adaptor subunit | DW035_02945 | Not Available | Negative | 698840 - 699937 | 40122.2 |
| abc transporter permease | DW035_02950 | Not Available | Negative | 699973 - 701217 | 46016.3 |
| abc transporter permease | DW035_02955 | Not Available | Negative | 701220 - 702470 | 46106.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

