Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DW035_02810 | Not Available | Positive | 666796 - 667254 | 17906.5 |
| dna polymerase iii subunit gamma/tau | DW035_02815 | Not Available | Negative | 667343 - 669181 | 68652.9 |
| septum formation initiator family protein | DW035_02820 | Not Available | Positive | 669302 - 669604 | 12038.6 |
| hypothetical protein | DW035_02825 | Not Available | Positive | 669604 - 669945 | 12916.5 |
| ai-2e family transporter | DW035_02830 | Not Available | Positive | 669970 - 670986 | 37761.7 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DW035_02835 | Not Available | Negative | 670973 - 671884 | 35424.9 |
| hypothetical protein | DW035_02840 | Not Available | Negative | 671995 - 672552 | 21570.5 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DW035_02845 | Not Available | Negative | 672597 - 673364 | 27820.7 |
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | DW035_02850 | Not Available | Negative | 673366 - 674751 | 51551.7 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | DW035_02855 | Not Available | Negative | 674756 - 675796 | 37307.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

