Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_02740 | Not Available | Negative | 652187 - 652774 | 22269.5 |
| mate family efflux transporter | DW035_02765 | Not Available | Negative | 656813 - 658156 | 48771.9 |
| alanine--trna ligase | DW035_02770 | Not Available | Negative | 658302 - 660920 | 97045.0 |
| m23 family peptidase | DW035_02775 | Not Available | Positive | 661054 - 662019 | 36401.8 |
| merr family transcriptional regulator | DW035_02780 | Not Available | Positive | 662035 - 662382 | 13701.8 |
| endonuclease iii | DW035_02785 | Not Available | Negative | 662447 - 663094 | 24202.8 |
| magnesium and cobalt transport protein cora | DW035_02790 | Not Available | Negative | 663129 - 664169 | 40370.7 |
| 4fe-4s dicluster domain-containing protein | DW035_02795 | Not Available | Negative | 664182 - 665063 | 33032.3 |
| vut family protein | DW035_02800 | Not Available | Positive | 665436 - 666122 | 25124.7 |
| 7-cyano-7-deazaguanine synthase quec | DW035_02805 | Not Available | Positive | 666128 - 666793 | 24900.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

