Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 643104 - 643194 | Not Available |
| mota/tolq/exbb proton channel family protein | DW035_02695 | Not Available | Positive | 643254 - 644054 | 28434.3 |
| hypothetical protein | DW035_02700 | Not Available | Positive | 644063 - 644527 | 16389.8 |
| biopolymer transporter exbd | DW035_02705 | Not Available | Positive | 644570 - 645157 | 22221.3 |
| biopolymer transporter exbd | DW035_02710 | Not Available | Positive | 645160 - 645624 | 17900.0 |
| mate family efflux transporter | DW035_02715 | Not Available | Negative | 645834 - 647192 | 50596.7 |
| Trna-leu | Not Available | Not Available | Positive | 647266 - 647347 | Not Available |
| peptidase s41 | DW035_02725 | Not Available | Negative | 647421 - 648446 | 38965.8 |
| duf3316 domain-containing protein | DW035_02730 | Not Available | Negative | 648448 - 649296 | 32177.3 |
| dna gyrase/topoisomerase iv subunit a | DW035_02735 | Not Available | Negative | 649303 - 651948 | 100999.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

