Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyamine abc transporter atp-binding protein | DW035_02640 | Not Available | Positive | 632996 - 634396 | 52563.5 |
| abc transporter permease | DW035_02645 | Not Available | Positive | 634393 - 635190 | 29810.1 |
| abc transporter permease | DW035_02650 | Not Available | Positive | 635184 - 635975 | 28716.2 |
| extracellular solute-binding protein | DW035_02655 | Not Available | Positive | 635984 - 637312 | 51077.2 |
| 6-phosphofructokinase | DW035_02660 | Not Available | Negative | 637398 - 638378 | 35283.4 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DW035_02665 | Not Available | Negative | 638457 - 639320 | 32561.2 |
| (d)cmp kinase | DW035_02670 | Not Available | Negative | 639307 - 640005 | 26136.2 |
| energy transducer tonb | DW035_02675 | Not Available | Positive | 640422 - 641108 | 25879.1 |
| polyprenyl synthetase family protein | DW035_02680 | Not Available | Positive | 641186 - 642169 | 37545.8 |
| tatd family deoxyribonuclease | DW035_02685 | Not Available | Positive | 642174 - 642965 | 29913.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

