Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_02540 | Not Available | Positive | 601082 - 601666 | 23318.2 |
| hypothetical protein | DW035_02545 | Not Available | Positive | 601720 - 602496 | 28953.8 |
| d-xylose transporter xyle | DW035_02550 | Not Available | Negative | 602735 - 604216 | 54183.1 |
| xylose isomerase | DW035_02555 | Not Available | Negative | 604315 - 605631 | 49088.2 |
| carbohydrate kinase | DW035_02560 | Not Available | Negative | 605668 - 607155 | 53325.4 |
| nudix hydrolase | DW035_02565 | Not Available | Negative | 607176 - 607898 | 28295.4 |
| mbl fold metallo-hydrolase | DW035_02570 | Not Available | Positive | 608261 - 609004 | 28015.8 |
| hypothetical protein | DW035_02575 | Not Available | Negative | 609130 - 610113 | 36733.3 |
| hypothetical protein | DW035_02580 | Not Available | Negative | 610136 - 612886 | 104864.0 |
| endonuclease/exonuclease/phosphatase family protein | DW035_02585 | Not Available | Negative | 612904 - 613944 | 39430.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

