Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-nucleotidase | DW035_02440 | Not Available | Positive | 579750 - 580532 | 27955.9 |
| bifunctional metallophosphatase/5'-nucleotidase | DW035_02445 | Not Available | Positive | 580547 - 581389 | 31366.8 |
| beta-n-acetylglucosaminidase | DW035_02450 | Not Available | Positive | 581405 - 584374 | 110365.0 |
| 4fe-4s dicluster domain-containing protein | DW035_02455 | Not Available | Positive | 584496 - 584663 | 5631.56 |
| pyridoxal phosphate-dependent aminotransferase | DW035_02460 | Not Available | Negative | 584942 - 586135 | 43403.1 |
| bax inhibitor (bi)-1/ycca family protein | DW035_02465 | Not Available | Negative | 586222 - 586923 | 25971.7 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DW035_02470 | Not Available | Negative | 586940 - 588154 | 44953.2 |
| yjgp/yjgq family permease | DW035_02475 | Not Available | Negative | 588171 - 590063 | 72495.1 |
| hypothetical protein | DW035_02480 | Not Available | Negative | 590141 - 590524 | 15035.6 |
| Trna-met | Not Available | Not Available | Positive | 590844 - 590920 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

