Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2075 domain-containing protein | DW035_02385 | Not Available | Positive | 570551 - 571972 | 53770.1 |
| glycine c-acetyltransferase | DW035_02390 | Not Available | Negative | 572091 - 573281 | 43864.6 |
| nad-dependent epimerase/dehydratase family protein | DW035_02395 | Not Available | Positive | 573412 - 574365 | 35154.9 |
| is66 family insertion sequence hypothetical protein | DW035_02405 | Not Available | Positive | 575369 - 575722 | 13287.8 |
| transposase | DW035_02410 | Not Available | Positive | 575727 - 576074 | 13437.4 |
| hypothetical protein | DW035_02415 | Not Available | Negative | 576502 - 577356 | 32308.3 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | DW035_02420 | Not Available | Negative | 577381 - 578055 | 24991.3 |
| thymidine kinase | DW035_02425 | Not Available | Positive | 578247 - 578843 | 22215.6 |
| Trna-lys | Not Available | Not Available | Positive | 578963 - 579035 | Not Available |
| 50s ribosomal protein l19 | DW035_02435 | Not Available | Negative | 579169 - 579522 | 13103.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

