Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_02220 | Not Available | Negative | 533545 - 534300 | 28839.7 |
| duf4065 domain-containing protein | DW035_02225 | Not Available | Negative | 534269 - 534748 | 18938.4 |
| rtec protein | DW035_02230 | Not Available | Negative | 534852 - 535457 | 23287.1 |
| deaminase | DW035_02235 | Not Available | Negative | 535696 - 536118 | 16017.4 |
| sigma-54-dependent fis family transcriptional regulator | DW035_02240 | Not Available | Negative | 536398 - 537720 | 49662.1 |
| hybrid sensor histidine kinase/response regulator | DW035_02245 | Not Available | Negative | 537713 - 540031 | 86984.1 |
| tetracycline resistance ribosomal protection protein tet(q) | DW035_02250 | Not Available | Negative | 540031 - 541956 | 72159.9 |
| dna methylase | DW035_02255 | Not Available | Negative | 542613 - 548426 | 220151.0 |
| duf1896 domain-containing protein | DW035_02260 | Not Available | Negative | 548416 - 549003 | 22268.0 |
| type ia dna topoisomerase | DW035_02265 | Not Available | Negative | 549031 - 551118 | 77608.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

