Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase family protein | DW035_02110 | Not Available | Negative | 514612 - 515118 | 19369.5 |
| dna mismatch repair protein muts | DW035_02115 | Not Available | Positive | 515328 - 517916 | 97218.4 |
| radical sam protein | DW035_02120 | Not Available | Positive | 517929 - 518708 | 29233.2 |
| hypothetical protein | DW035_02125 | Not Available | Negative | 518776 - 519054 | 10326.4 |
| leucine-rich repeat domain-containing protein | DW035_02130 | Not Available | Negative | 518993 - 519379 | 14166.9 |
| hypothetical protein | DW035_02135 | Not Available | Negative | 519761 - 519982 | 8908.84 |
| duf4141 domain-containing protein | DW035_02140 | Not Available | Negative | 520261 - 520488 | 8318.14 |
| duf3876 domain-containing protein | DW035_02145 | Not Available | Negative | 520513 - 520893 | 14412.4 |
| group ii intron reverse transcriptase/maturase | DW035_02155 | Not Available | Negative | 521160 - 522983 | 70963.0 |
| trag family conjugative transposon atpase | DW035_02160 | Not Available | Negative | 523531 - 525930 | 92226.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

