Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein insertion efficiency factor yidd | DW035_02055 | Not Available | Positive | 501836 - 502057 | 8424.46 |
| deoxyribonuclease | DW035_02060 | Not Available | Positive | 502073 - 502729 | 25040.7 |
| tyrosine--trna ligase | DW035_02065 | Not Available | Positive | 502809 - 504101 | 48414.0 |
| peptidase s41 | DW035_02070 | Not Available | Negative | 504422 - 507673 | 121908.0 |
| Trna-gln | Not Available | Not Available | Positive | 507806 - 507879 | Not Available |
| type ii toxin-antitoxin system hicb family antitoxin | DW035_02085 | Not Available | Positive | 509067 - 509258 | 7387.28 |
| udp-2,3-diacylglucosamine diphosphatase | DW035_02090 | Not Available | Positive | 509457 - 510266 | 31244.4 |
| glycosyltransferase | DW035_02095 | Not Available | Positive | 510263 - 511381 | 43137.2 |
| rna degradosome polyphosphate kinase | DW035_02100 | Not Available | Positive | 511453 - 513522 | 79550.3 |
| ppx/gppa family phosphatase | DW035_02105 | Not Available | Positive | 513538 - 514524 | 37226.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

