Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3098 domain-containing protein | DW035_02005 | Not Available | Positive | 494235 - 494486 | 9380.9 |
| undecaprenyl-diphosphate phosphatase | DW035_02010 | Not Available | Positive | 494492 - 495295 | 28896.4 |
| trna pseudouridine(55) synthase trub | DW035_02015 | Not Available | Positive | 495326 - 496030 | 26475.2 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DW035_02020 | Not Available | Positive | 496048 - 497103 | 40342.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DW035_02025 | Not Available | Positive | 497115 - 497573 | 17087.6 |
| methionine adenosyltransferase | DW035_02030 | Not Available | Positive | 497803 - 499098 | 47810.9 |
| tigr00730 family rossman fold protein | DW035_02035 | Not Available | Positive | 499224 - 499811 | 21752.6 |
| duf4271 domain-containing protein | DW035_02040 | Not Available | Positive | 499808 - 500617 | 31474.7 |
| uroporphyrinogen-iii synthase | DW035_02045 | Not Available | Positive | 500623 - 501369 | 28506.4 |
| ribonuclease p protein component | DW035_02050 | Not Available | Positive | 501444 - 501839 | 14874.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

