Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4450 domain-containing protein | DW035_01955 | Not Available | Positive | 482238 - 482861 | 23019.4 |
| glycoside hydrolase family 28 protein | DW035_01960 | Not Available | Positive | 482858 - 484297 | 53542.5 |
| rhamnogalacturonan lyase | DW035_01965 | Not Available | Positive | 484314 - 486251 | 71482.7 |
| glycosyl hydrolase | DW035_01970 | Not Available | Positive | 486282 - 488432 | 80553.7 |
| acetyl-coa hydrolase/transferase family protein | DW035_01975 | Not Available | Negative | 488508 - 490004 | 54208.0 |
| hypothetical protein | DW035_01980 | Not Available | Negative | 490048 - 490395 | 13279.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DW035_01985 | Not Available | Positive | 490518 - 491891 | 51835.1 |
| pspc domain-containing protein | DW035_01990 | Not Available | Negative | 492097 - 492297 | 7447.22 |
| class i sam-dependent methyltransferase | DW035_01995 | Not Available | Positive | 492437 - 493333 | 34652.6 |
| cell division protein ftsx | DW035_02000 | Not Available | Positive | 493340 - 494209 | 32595.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

