Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine--trna ligase | DW035_01905 | Not Available | Negative | 455108 - 457942 | 108079.0 |
| duf4982 domain-containing protein | DW035_01910 | Not Available | Positive | 458083 - 460521 | 92185.1 |
| duf4982 domain-containing protein | DW035_01915 | Not Available | Negative | 460595 - 463594 | 113242.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_01920 | Not Available | Negative | 463740 - 466070 | 87744.0 |
| tonb-dependent receptor | DW035_01925 | Not Available | Negative | 466097 - 469402 | 121760.0 |
| recombinase | DW035_01930 | Not Available | Negative | 469507 - 470694 | 46442.6 |
| tonb-dependent receptor | DW035_01935 | Not Available | Positive | 471226 - 474357 | 114948.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_01940 | Not Available | Positive | 474376 - 476472 | 78823.9 |
| hypothetical protein | DW035_01945 | Not Available | Positive | 476630 - 479887 | 123558.0 |
| beta-galactosidase | DW035_01950 | Not Available | Negative | 479975 - 482047 | 80069.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

