Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redox-regulated atpase ychf | DW035_01855 | Not Available | Positive | 440015 - 441118 | 40890.8 |
| ketopantoate reductase family protein | DW035_01860 | Not Available | Positive | 441185 - 442096 | 32997.1 |
| chloramphenicol acetyltransferase | DW035_01865 | Not Available | Positive | 442093 - 442743 | 25111.8 |
| hypothetical protein | DW035_01870 | Not Available | Positive | 442768 - 443736 | 36737.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_01875 | Not Available | Negative | 443733 - 445223 | 55111.5 |
| tonb-dependent receptor | DW035_01880 | Not Available | Negative | 445238 - 448315 | 113863.0 |
| non-canonical purine ntp diphosphatase | DW035_01885 | Not Available | Negative | 448494 - 449075 | 21271.2 |
| beta-n-acetylhexosaminidase | DW035_01890 | Not Available | Negative | 449081 - 451417 | 86806.5 |
| glycoside hydrolase family 2 protein | DW035_01895 | Not Available | Negative | 451451 - 454024 | 99185.9 |
| yitt family protein | DW035_01900 | Not Available | Negative | 454142 - 455038 | 33466.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

